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Boutiques: a flexible framework to integrate command-line applications in computing platforms

Title:

Boutiques: a flexible framework to integrate command-line applications in computing platforms

Glatard, Tristan, Kiar, Gregory, Aumentado-Armstrong, Tristan, Beck, Natacha, Bellec, Pierre, Bernard, Rémi, Bonnet, Axel, Brown, Shawn T, Camarasu-Pop, Sorina, Cervenansky, Frédéric, Das, Samir, Ferreira da Silva, Rafael, Flandin, Guillaume, Girard, Pascal, Gorgolewski, Krzysztof J, Guttmann, Charles R G, Hayot-Sasson, Valerie, Quirion, Pierre-Olivier, Rioux, Pierre, Rousseau, Marc-Étienne and Evans, Alan C (2018) Boutiques: a flexible framework to integrate command-line applications in computing platforms. GigaScience, 7 (5). ISSN 2047-217X

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Official URL: http://dx.doi.org/10.1093/gigascience/giy016

Abstract

We present Boutiques, a system to automatically publish, integrate, and execute command-line applications across computational platforms. Boutiques applications are installed through software containers described in a rich and flexible JSON language. A set of core tools facilitates the construction, validation, import, execution, and publishing of applications. Boutiques is currently supported by several distinct virtual research platforms, and it has been used to describe dozens of applications in the neuroinformatics domain. We expect Boutiques to improve the quality of application integration in computational platforms, to reduce redundancy of effort, to contribute to computational reproducibility, and to foster Open Science.

Divisions:Concordia University > Gina Cody School of Engineering and Computer Science > Computer Science and Software Engineering
Item Type:Article
Refereed:Yes
Authors:Glatard, Tristan and Kiar, Gregory and Aumentado-Armstrong, Tristan and Beck, Natacha and Bellec, Pierre and Bernard, Rémi and Bonnet, Axel and Brown, Shawn T and Camarasu-Pop, Sorina and Cervenansky, Frédéric and Das, Samir and Ferreira da Silva, Rafael and Flandin, Guillaume and Girard, Pascal and Gorgolewski, Krzysztof J and Guttmann, Charles R G and Hayot-Sasson, Valerie and Quirion, Pierre-Olivier and Rioux, Pierre and Rousseau, Marc-Étienne and Evans, Alan C
Journal or Publication:GigaScience
Date:2018
Projects:
  • Concordia Open Access Author Fund
  • Canada First Research Excellence Fund
Digital Object Identifier (DOI):10.1093/gigascience/giy016
Keywords:application integration; containers; neuroinformatics
ID Code:983996
Deposited By: KRISTA ALEXANDER
Deposited On:03 Jul 2018 13:45
Last Modified:03 Jul 2018 13:45
Additional Information:Supplementary data available: https://academic.oup.com/gigascience/article/7/5/giy016/4951979#supplementary-data

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