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Expression, purification, crystallization and preliminary X-ray analysis of PR-AMP cyclohydrolase : a zinc binding enzyme from methanobacterium thermoautotrophicum

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Expression, purification, crystallization and preliminary X-ray analysis of PR-AMP cyclohydrolase : a zinc binding enzyme from methanobacterium thermoautotrophicum

Boju, Lorena (2004) Expression, purification, crystallization and preliminary X-ray analysis of PR-AMP cyclohydrolase : a zinc binding enzyme from methanobacterium thermoautotrophicum. Masters thesis, Concordia University.

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Abstract

Histidine is an essential amino acid since humans and other higher eukaryotes lack the cellular biosynthetic machinery for its manufacture. Phosphoribosyl-AMP cyclohydrolase (PRA-CH, EC 3.5.4.19) is the third enzyme in the histidine biosynthetic pathway. PRA-CH catalyzes the hydrolysis of the N1-C6 bond of the purine substrate N1-(5 ' -phosphoribosyl)adenosine 5 ' -monophosphate (PR-AMP). The enzyme from Methanobacterium thermoautotrophicum , overexpressed in E. coli , was selected for crystallization trials as steps towards obtaining its three dimensional structure by X-ray diffraction. Initial attempts of purifying the recombinant hexa histidine tag protein were not successful. A new construct encoding for PRA-CH without the His-tag was made, overexpressed in E. coli and purified to homogeneity using heat treatment followed by one chromatographic step. Yields of 50-60 mg were obtained per liter of culture. The enzyme was shown by Dynamic Light Scattering studies to form a homodimer of 31 500 Da. Crystals of the protein were formed at an unusually low concentration of 2.1 mg/ml by the vapour-diffusion method using sodium acetate as precipitant. The presence of 50 mM Cd(SO 4 ) 2 in the reservoir solution was essential for the crystallization of the protein. Crystals appeared within two weeks at room temperature. They belong to the orthorhombic system, space group P2 1 2 1 2 1 , with cell dimensions a = 39.7Å, b = 54.3Å, c = 117.3Å, [Special characters omitted.] = [up down arrow] = [white square] = 90{493}. These crystals diffracted to 1.76Å at the synchrotron beamline. Several attempts to determine the 3-D structure of PR-AMP cyclohydrolase by multiwavelength anomalous dispersion were unsuccessful. Following completion of the thesis, however, the structure was eventually solved by single wavelength anomalous dispersion.

Divisions:Concordia University > Faculty of Arts and Science > Chemistry and Biochemistry
Item Type:Thesis (Masters)
Authors:Boju, Lorena
Pagination:xiii, 72 leaves : ill. (some col.) ; 29 cm.
Institution:Concordia University
Degree Name:M. Sc.
Program:Chemistry
Date:2004
Thesis Supervisor(s):Cygler, Miroslaw and Turnbull, Joanne
Identification Number:QR 92 M46B65 2004
ID Code:8075
Deposited By: Concordia University Library
Deposited On:18 Aug 2011 18:14
Last Modified:13 Jul 2020 20:03
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