Login | Register

Developing an Open Source DNA Data Visualization Application

Title:

Developing an Open Source DNA Data Visualization Application

Neugebauer, Tomasz ORCID: https://orcid.org/0000-0002-9743-5910 (2018) Developing an Open Source DNA Data Visualization Application. In: True North Science Boot Camp 2018, May 23 to 25, 2018, Montreal. (Unpublished)

[img]
Slideshow (application/vnd.openxmlformats-officedocument.presentationml.presentation)
DevelopingOpenSource-DDV.pptx - Presentation
Available under License Spectrum Terms of Access.
86MB

Abstract

This presentation will describe a collaboration between a digital projects & systems development librarian and biologists. Data visualization methods are necessary during the exploration and analysis activities of an increasingly data-intensive scientific process. In collaboration with biologists, software that converts DNA data sets into interfaces was developed and described in a PLOS One publication (https://doi.org/10.1371/journal.pone.0143615). In this application, images are generated and then processed as multi-scale images to be accessed through a web-based interface that supports zooming, panning and sequence fragment selection. Nucleotide composition frequencies and GC skew of a selected sequence segment can be obtained through the interface. The software was used to generate DNA data visualizations of human and bacterial chromosomes. The software and its source code was made available for download and further development. This presentation will describe the development process, including the choice of open source licensing and research data management.

Divisions:Concordia University > Library
Item Type:Conference or Workshop Item (Other)
Refereed:No
Authors:Neugebauer, Tomasz
Date:25 May 2018
ID Code:983919
Deposited By: TOMASZ NEUGEBAUER
Deposited On:04 Jun 2018 14:33
Last Modified:04 Jun 2018 14:33
Related URLs:
All items in Spectrum are protected by copyright, with all rights reserved. The use of items is governed by Spectrum's terms of access.

Repository Staff Only: item control page

Downloads per month over past year

Back to top Back to top