References:

Akaike H (1987) Factor analysis and AIC. Psychometrika 52: 317-332. doi: 10.1007/978-1-4612-1694-0_29
Allendorf FW (1986) Genetic drift and the loss of alleles versus heterozygosity. Zoo Biol 5: 181-190. doi: 10.1002/zoo.1430050212
Amiro PG (2003) Population Status of Inner Bay of Fundy Atlantic Salmon, Salmo Salar, to 1999. Department of Fisheries & Oceans, Science Branch, Bedford Institute of Oceanography, Diadromous Fish Division.
Anderson JH, Faulds PL, Atlas WI, Quinn TP (2013) Reproductive success of captively bred and naturally spawned Chinook salmon colonizing newly accessible habitat. Evol App 6: 165-179. doi: 10.1111/j.1752-4571.2012.00271.x
Anderson JH, Faulds PL, Atlas WI, Pess GR, Quinn TP (2010) Selection on breeding date and body size in colonizing coho salmon, Oncorhynchus kisutch. Mol Ecol 19: 2562-2573. doi: 10.1111/j.1365-294X.2010.04652.x
Anderson JH, Pess GR, Carmichael RW, Ford MJ, Cooney TD, Baldwin CM, McClure MM (2014) Planning Pacific salmon and steelhead reintroductions aimed at long-term viability and recovery. North Am J Fish Manag 34: 72-93. doi:10.1080/02755947.2013.847875
Anderson JH, Ward EJ, Carlson S.M (2011). A model for estimating the minimum number of offspring to sample in studies of reproductive success. Journal of Heredity102: 567-576. Doi: 10.1093/jhered/esr060
Araki H, Berejikian BA, Ford MJ, Blouin MS (2008) Fitness of hatchery‐reared salmonids in the wild. Evol App, 1: 342-355. doi: 10.1111/j.1752-4571.2008.00026.x
Araki H, Ardren WR, Olsen E, Cooper B, Blouin MS (2007a) Reproductive success of captive‐bred steelhead trout in the wild: evaluation of three hatchery programs in the Hood River. Conserv Biol 21: 181-190. doi: 10.1111/j.1523-1739.2006.00564.x
Araki H, Cooper, B, Blouin MS (2007b) Genetic effects of captive breeding cause a rapid, cumulative fitness decline in the wild. Science 318(5847): 100-103. doi: 10.1126/science.1145621
Araki H, Berejikian BA, Ford MJ, Blouin MS (2008) Fitness of hatchery‐reared salmonids in the wild. Evol Appl 1: 342-355. doi: 10.1111/j.1752-4571.2008.00026.x
Araki H, Cooper B, Blouin MS (2009) Carry-over effect of captive breeding reduces reproductive fitness of wild-born descendants in the wild. Biol Lett 5: 621-624. doi: 10.1098/rsbl.2009.0315
Armstrong DP, Seddon PJ (2008) Directions in reintroduction biology. Trends Ecol Evol 23: 20-25. doi: 10.1016/j.tree.2007.10.003
Bacles CF, Bouchard C, Lange F, Manicki A, Tentelier C, Lepais O (2018) Estimating the effective number of breeders from single parr samples for conservation monitoring of wild populations of Atlantic salmon Salmo salar. J Fish Biol 92: 699-726. doi:10.1111/jfb.13537
Barton BA, Iwama, GK (1991) Physiological changes in fish from stress in aquaculture with emphasis on the response and effects of corticosteroids. Annu Rev Fish Dis 1: 3-26. doi: 10.1016/0959-8030(91)90019-G
Bateman AJ (1948) Intra-sexual selection in Drosophila. Heredity, 2:349-368.
Beechie T, Pess G, Roni P, Giannico G (2008) Setting river restoration priorities: a review of approaches and a general protocol for identifying and prioritizing actions. North Am J Fish Manag 28: 891-905. doi: 10.1577/M06-174.1
Berejikian BA, Tezak EP, Schroder SL (2001) Reproductive behavior and breeding success of captively reared Chinook salmon. North Ame J Fish Manag 21: 255–260. doi: 10.1577/1548-8675(2001)021<0255:RBABSO>2.0.CO;2
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the royal statistical society. Series B Methological 57: 289-300.
Breslow N (1990) Tests of hypotheses in overdispersed Poisson regression and other quasi-likelihood models. J Am Stat Assoc 85: 565-571. doi: 10.1080/01621459.1990.10476236
Brunsdon EB, Fraser DJ, Ardren WR, Grant JWA (2017) Dispersal and density-dependent growth of Atlantic salmon (Salmo salar) juveniles: clumped versus dispersed stocking. Can J Fish Aquat Sci 74:1337-1347. doi: 10.1139/cjfas-2015-0488
Brunsdon EB, Prevost AD, Fraser DJ, Ardren WR, Grant JWA (Submitted) Habitat Use of Landlocked Juvenile Atlantic Salmon (Salmo salar).
Brown C, Day RL (2002) The future of stock enhancements: lessons for hatchery practice from conservation biology. Fish a Fish 3: 79-94. doi:10.1046/j.1467-2979.2002.00077.x
Burnett NJ, Hinch SG, Braun DC, Casselman MT, Middleton CT, Wilson SM, Cooke SJ (2014) Burst swimming in areas of high flow: delayed consequences of anaerobiosis in wild adult sockeye salmon. Physiol Biochem Zool 87:587-598. doi: 10.1086/677219
Cairney M, Taggart JB, Høyheim B (2000) Characterization of microsatellite and minisatellite loci in Atlantic salmon (Salmo salar L.) and cross‐species amplification in other salmonids. Mol Ecol 9(: 2175-2178. doi:10.1046/j.1365-294X.2000.105312.x
Castro-Santos T, Haro A (2003) Quantifying migratory delay: a new application of survival analysis methods. Can J Fish Aquat Sci, 60:986-996. doi: /10.1139/f03-086
Chaput G (2012) Overview of the status of Atlantic salmon (Salmo salar) in the North Atlantic and trends in marine mortality. ICES J Mar Sci 69:1538-1548. doi: 10.1093/icesjms/fss013
Christie MR, Ford MJ, Blouin MS (2014) On the reproductive success of early‐generation hatchery fish in the wild. Evol Appl 7:883-896. doi:10.1111/eva.12183
Christie MR, Tennessen JA, Blouin MS (2013) Bayesian parentage analysis with systematic accountability of genotyping error, missing data and false matching. Bioinformatics 29: 725–732. doi: 10.1093/bioinformatics/btt039
Clarke CN, Fraser DJ, Purchase CF (2016) Lifelong and carry‐over effects of early captive exposure in a recovery program for Atlantic salmon (Salmo salar). Anim Conserv 19: 350-359. doi: 10.1111/acv.12251
Cochran-Biederman JL, Wyman KE, French WE, Loppnow GL (2015) Identifying correlates of success and failure of native freshwater fish reintroductions. Conserv Biol 29:175–186. doi:10.1111/cobi.12374
Dadswell M (1968) Atlantic salmon (Salmo salar) investigations in the Point Wolfe and Upper Salmon Rivers in Fundy National Park. Manuscript Report, Limnology Section, Canadian Wildlife Service
Dempson JB, Pepper VA, Furey G, Bloom M, Nicholls T, Hoskins G (1999) Evaluation of an alternative strategy to enhance salmon populations: cage rearing wild smolts from Conne River, Newfoundland. ICES J Mar Sci, 56:422-432. doi: 10.1006/jmsc.1999.0453
DFO (2010) Recovery Strategy for the Atlantic salmon (Salmo salar), inner Bay of Fundy populations [Final]. In Species at Risk Act Recovery Strategy Series. Ottawa: Fisheries and Oceans Canada.
DFO (2016) Action Plan for the Atlantic Salmon (Salmo salar), inner Bay of Fundy populations in Canada. In Species at Risk Act Recovery Strategy Series. Ottawa: Fisheries and Oceans Canada.
DFO (2018) Review of Risks and Benefits of Collaboration for Atlantic Salmon Tomorrow’s (CAST) Smolt-to-Adult Supplementation (SAS) Experiment Proposal (Phase 1: 2018- 2022). DFO Can. Sci. Advis Sec Sci Advis Rep. 2018/014.
Dickerson BR, Quinn TP, Willson MF (2002) Body size, arrival date, and reproductive success of pink salmon, Oncorhynchus gorbuscha. Ethol Ecol Evol 14: 29-44. doi: 10.1080/08927014.2002.9522759
Dickerson BR, Brinck KW, Willson MF, Bentzen P, Quinn TP (2005) Relative importance of salmon body size and arrival time at breeding grounds to reproductive success. Ecology 86: 347-352. doi: 10.1890/03-625
Dudgeon D, Arthington AH, Gessner MO, Kawabata ZI, Knowler DJ, Lévêque C, Sullivan CA (2006) Freshwater biodiversity: importance, threats, status and conservation challenges. Biol Rev 81: 163-182. doi: 10.1017/S1464793105006950
Dunham J, Gallo K, Shively D, Allen C, Goehring B (2011) Assessing the feasibility of native fish reintroductions: a framework applied to threatened bull trout. North Am J Fish Manag 31:106-115. doi: 10.1080/02755947.2011.559830
Evans ML, Wilke NF, O'Reilly PT, Fleming IA (2014) Transgenerational effects of parental rearing environment influence the survivorship of captive‐born offspring in the wild. Conserv Lett 7: 371-379. doi: 10.1139/cjfas-2015-0317
Fischer J, Lindenmayer DB (2000) An assessment of the published results of animal relocations. Biol Conserv 96: 1-11. doi: 10.1016/S0006-3207(00)00048-3
Fisher JP, Spitsbergen JM, Getchel R, Symula J, Skea J, Babenzein M, and Chiotti, T (1995) Reproductive Failure of Landlocked Atlantic Salmon from New York's Finger Lakes: Investigations into the Etiology and Epidemiology of the "Cayuga Syndrome". J Aquat Anim Health 7: 81-94. doi: 10.1577/1548-8667(1995)007<0081:RFOLAS>2.3.CO;2
Fleming IA (1996) Reproductive strategies of Atlantic salmon: ecology and evolution. Rev Fish Biol Fisher 6:379-416. doi: 10.1007/BF00164323
Fleming IA (1998) Pattern and variability in the breeding system of Atlantic salmon (Salmo salar), with comparisons to other salmonids. Can J Fish Aquat Sci 55: 59-76. doi: 10.1139/d98-009
Fleming IA, Gross MR (1994) Breeding competition in a Pacific salmon (coho: Oncorhynchus kisutch): measures of natural and sexual selection. Evolution 48:637-657. doi: 10.1111/j.1558-5646.1994.tb01350.x
Fleming IA, Jonsson B, Gross MR, Lamberg, A (1996) An experimental study of the reproductive behaviour and success of farmed and wild Atlantic salmon (Salmo salar). J App Ecol 1:893-905. doi: 10.2307/2404960
Fleming IA, Lamberg A, Jonsson B (1997) Effects of early experience on the reproductive performance of Atlantic salmon. Behav Ecol 8: 470-480. doi: 10.1093/beheco/8.5.470
Foote CJ (1990) An experimental comparison of male and female spawning territoriality in a Pacific salmon. Behav 115:283-314. doi: 10.1163/156853990X00617
Ford MJ, Hard JJ, Boelts B, LaHood E, Miller J (2008) Estimates of natural selection in a salmon population in captive and natural environments. Conserv Biol 22:783-794. doi: 10.1111/j.1523-1739.2008.00965.x
Frankham, R. (1995). Inbreeding and extinction: a threshold effect. Conserv Biol, 9(4), 792-799. doi: 10.1046/j.1523-1739.1995.09040792.x
Frankham R (2008). Genetic adaptation to captivity in species conservation programs. Mol Ecol, 17:325-333. doi: 10.1111/j.1365-294X.2007.03399.x.
Franklin IR (1980) Evolutionary change in small populations. In: Soule ME and Wilcox B (eds) Conservation biology: an evolutionary-ecological perspective. Sinauer, Sunderland. Pp. 135–150
Fraser DJ (2008) How well can captive breeding programs conserve biodiversity? A review of salmonids. Evol Appl 1: 535-586. doi:10.1111/j.1752-4571.2008.00036.x
Fraser DJ (2016) Risks and benefits of mitigating low marine survival in wild salmon using smolt-to-adult captive-reared supplementation. DFO Can Sci Advis Sec Res Doc 2016/030. v + 31 p.
Fraser DJ, Jones MW, McParland TL, Hutchings JA (2007) Loss of historical immigration and the unsuccessful rehabilitation of extirpated salmon populations. Conserv Genet 8:527-546. doi: 0.1007/s10592-006-9188-8
Fraser DJ, Weir LK, Bernatchez L, Hansen MM, Taylor EB (2011). Extent and scale of local adaptation in salmonid fishes: review and meta-analysis. Heredity 106, 404-420.
Galloway BT, Muhlfeld CC, Guy CS, Downs CC, Fredenberg WA, (2016) A framework for assessing the feasibility of native fish conservation translocations: applications to threatened Bull Trout. N Am J Fish Manag 36, 754-768. doi: 10.1080/02755947.2016.1146177
Garant D, Dodson JJ, Bernatchez L (2001) A genetic evaluation of mating system and determinants of individual reproductive success in Atlantic salmon (Salmo salar L.). J Hered 92:137-145. doi: 10.1093/jhered/92.2.137
Garant D, Dodson JJ, Bernatchez L (2003) Differential reproductive success and heritability of alternative reproductive tactics in wild Atlantic salmon (Salmo salar L.). Evolution 57: 1133-1141. Doi: 10.1111/j.0014-3820.2003.tb00322.x
Garant D, Dodson JJ, Bernatchez L (2005) Offspring genetic diversity increases fitness of female Atlantic salmon (Salmo salar). Behav Ecol Sociobiol 57(3): 240-244. doi: 10.1007/s00265-004-0854-x
Gibson AJF, Bowlby HD, Bryan JR, Amiro PG (2008) Population viability analysis of inner Bay of Fundy Atlantic salmon with and without live gene banking. Fisheries and Oceans.
Greenbaum G, Templeton AR, Zarmi Y, Bar-David S (2014) Allelic richness following population founding events–a stochastic modeling framework incorporating gene flow and genetic drift. PloS one 9(12): e115203. doi: 10.1371/journal.pone.0115203
Harbicht AB, Ardren WR, Fraser DJ (2017) A multidisciplinary approach to Atlantic salmon reintroductions: how human intervention can promote the establishment of new populations (PhD Dissertation). Concordia University, Montreal, Quebec.
Harbicht AB, Castro-Santos T, Gorsky D, Hand D, Fraser DJ, Ardren WR (2018) Environmental, anthropogenic, and dietary influences on fine-scale movement of Atlantic salmon through challenging waters. Can J Fish Aquat Sci 999:1-13. doi: 10.1139/cjfas-2017-0476
Harmon TS (2009) Methods for reducing stressors and maintaining water quality associated with live fish transport in tanks: a review of the basics. Rev Aqua 1:58-66. doi:10.1111/j.1753-5131.2008.01003.x
Harder A, Ardren WR, Evans AN, Futia MH, Kraft CE, Marsden EJ, Richter CA, Rinchard J, Tillitt DE, Christie MR. Thiamine deficiency in fishes: causes, consequences, and potential solutions. Rev Fish Biol Fish. In Press.
Harrison XA, Blount JD, Inger R, Norris DR, Bearhop S (2011) Carry‐over effects as drivers of fitness differences in animals. J Anim Ecol, 80:4-18. doi:10.1111/j/1365-2656.2010.01740.x
Heggberget TG, Hansen LP, Næsje TF (1988) Within-river spawning migration of Atlantic salmon (Salmo salar). Can J Fish Aquat Sci 45:1691-1698. doi: 10.1139/f88-200
Heard W (1995) An estimate of total 1992 hatchery releases of juvenile salmon, by country, into waters of the North Pacific Ocean and adjacent seas. NPAFC Doc, 154(6).
Hendry AP, Letcher BH, Gries G (2003) Estimating Natural Selection Acting on Stream‐Dwelling Atlantic Salmon: Implications for the Restoration of Extirpated Populations. Conserv Biol 17:795-805. doi:10.1046/j.1523-1739.2003.02075.x
Hill NL, Trueman RJ, Prevost AD, Ardren WR, Fraser DJ, Grant JWA (Submitted) Effect of dam removal on the quantity and quality of spawning habitat available for a reintroduced Atlantic salmon population
Hill NL, Ardren WR, Fraser DJ, Grant JWA (2018) Assessing limitations on reintroduction success: the influence of spawning habitat and thiamine deficiency on Atlantic salmon in Lake Champlain (Master’s Thesis). Concordia University, Montreal, Quebec.
Høgåsen HR (1998) Physiological Changes Associated with the Diadromous Migration of Salmonids: Canadian Special Publication of Fisheries and Aquatic Sciences No. 127. NRC Research Press.
Holt CA, Bradford, MJ (2011) Evaluating benchmarks of population status for Pacific salmon. North Am J Fish Manag, 31:363-378. doi: 10.1080/02755947.2011.578525
Houde AL, Fraser DJ, O’Reilly P, Hutchings JA (2011) Relative risks of inbreeding and outbreeding depression in the wild in endangered salmon. Evol Appl 4: 634-647. doi: 10.1111/j.1752-4571.2011.00186.x
Hua YG, Orban L (2005) A simple and affordable method for high throughput DNA extraction from animal tissues for PCR. Electrophoresis 26: 3081–3083. doi:10.1002/elps.200410411
IUCN/SSC Reintroduction Specialist Group (2013) Guidelines for reintroductions and other conservation translocations. Ecol Appl. Gland, Switzerland.
Janicke T, Häderer IK, Lajeunesse MJ, Anthes N (2016) Darwinian sex roles confirmed across the animal kingdom. Sci Adv 2(2): e1500983. doi: 10.1126/sciadv.1500983
Jelks HL, Walsh SJ, Burkhead NM, Contreras- Balderas S, Diaz-Pardo E, Hendrickson DA, LyonsJ, Mandrak NE, McCormick F, Nelson JS, Platania SP, Porter BA, Renaud, C.B., Schmitter-Soto JJ, Taylor EB, Melvin L, Warren MLJ (2008) Conservation status of imperiled North American freshwater and diadromous fishes. Fisheries 33: 372-407. doi:10.1577/1548-8446-22.8.372
Jones AG, Ardren WR (2003) Methods of parentage analysis in natural populations. Mol Ecol 12: 2511-2523. doi: 10.1046/j.1365-294X.2003.01928.x
Jones RA, Anderson L, Clarke CN (2014) Assessment of the Recovery Potential for the Outer Bay of Fundy Population of Atlantic Salmon (Salmo salar): Status, Trends, Distribution, Life History Characteristics and Recovery Targets. DFO Can Sci Advis Sec Res Doc 2014/008. vi + 94 p.
Jones AG, Small CM, Paczolt KA, Ratterman NL (2010) A practical guide to methods of parentage analysis. Mol Ecol Resour 10:6-30. doi: 10.1111/j.1755-0998.2009.02778.x.
Jonsson B, Jonsson N (2006) Cultured Atlantic salmon in nature: a review of their ecology and interaction with wild fish. ICES J Mar Sci 63:1162-1181. doi: 10.1016/j.icesjms.2006.03.004
King TL, Eackles MS, Letcher BH (2005) Microsatellite DNA markers for the study of Atlantic salmon (Salmo salar) kinship, population structure, and mixed‐fishery analyses. Mol Ecol Notes 5: 130-132. doi: 10.1111/j.1471-8286.2005.00860.x
Kinghorn B, Kinghorn S (2015) Pedigree Viewer.
Kozfkay CC, Stark EJ, Baker DJ, Ayers BS, Venditti DA, McCormick J, Kline P (2017) Captive rearing program for Salmon River Chinook salmon. Completion Report January 1, 1995—December 31, 2014. Idaho Department of Fish and Game Report Number 16-11. Xiii + 119p.
Lake Champlain Fish and Wildlife Management Cooperative, 2009 - 2015. Fisheries Technical Committee Annual Report. Retrieved from https://www.fws.gov/lcfwro/partnerships/reports.html.
Lapointe, M. F., Bergeron, N. E., Bérubé, F., Pouliot, M. A., & Johnston, P. (2004). Interactive effects of substrate sand and silt contents, redd-scale hydraulic gradients, and interstitial velocities on egg-to-emergence survival of Atlantic salmon (Salmo salar). Can J Fish Aquat Sci 61:2271-2277. doi: 10.1139/f04-236
Louhi P, Maki-Petays A, Erkinario J, (2008) Spawning habitat of Atlantic salmon and brown trout: general criteria and intragravel factors. River Res Applic 24: 330-339. doi:10.1002/rra.1072
Luikart, G., Sherwin, W. B., Steele, B. M., & Allendorf, F. W. (1998). Usefulness of molecular markers for detecting population bottlenecks via monitoring genetic change. Mol Ecol, 7: 963-974. doi: 10.1046/j.1365-294x.1998.00414.x
Marsden JE, Langdon RW (2012) The history and future of Lake Champlain's fishes and fisheries. J Great Lakes Res 38:19-34. doi: 10.1016/j.jglr.2011.09.007
Matson SE, Camara MD, Eichert W, Banks MA (2008) p‐loci: a computer program for choosing the most efficient set of loci for parentage assignment. Mol Ecol Resour 8: 765-768. doi: 10.1111/1755-0998.12393
McDowell RW, Sharpley AN, Chalmers AT (2002) Land use and flow regime effects on phosphorus chemical dynamics in the fluvial sediment of the Winooski River, Vermont. Ecol Eng 18: 477-487. doi: 10.1016/S0925-8574(01)00108-2
Miller KA, Nelson NJ, Smith HG, Moore JA (2009) How do reproductive skew and founder group size affect genetic diversity in reintroduced populations? Mol Ecol 18: 3792-3802. doi: 10.1111/j.1365-294X.2009.04315.x
Milot E, Perrier C, Papillon L, Dodson JJ, Bernatchez L (2013) Reduced fitness of Atlantic salmon released in the wild after one generation of captive breeding. Evol App 6:472-485. doi: 10.1111/eva.12028
Nyqvist D, McCormick SD, Greenberg L, Ardren WR, Bergman E, Calles O, Castro-Santos T (2017) Downstream Migration and Multiple Dam Passage by Atlantic Salmon Smolts. North Am J Fish Manag 37:816-828. doi: 10.1080/02755947.2017.1327900
O’Reilly PT, Herbinger C, Wright JM (1998) Analysis of parentage determination in Atlantic salmon (Salmo salar) using microsatellites. Anim. Genet. 29: 363–370. doi:10.1046/j.1265-2052.1998.295359.x
Palstra FP, Fraser DJ (2012) Effective/census population size ratio estimation: a compendium and appraisal. Ecol Evol 2:2357-2365. doi: 10.1002/ece3.329
Paterson S, Piertney SB, Knox D, Gilbey J, Verspoor E (2004) Characterization and PCR multiplexing of novel highly variable tetranucleotide Atlantic salmon (Salmo salar L.) microsatellites. Mol Ecol Notes 4:160–162. doi:10.1111/j.1471-8286.2004.00598.x
Peakall R, Smouse PE (2012) GenALEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28: 2537–2539. doi:10.1093/bioinformatics/bts460
Pess GR, Hilborn R, Kloehn K, Quinn TP (2012) The influence of population dynamics and environmental conditions on pink salmon (Oncorhynchus gorbuscha) recolonization after barrier removal in the Fraser River, British Columbia, Canada. Can J Fish Aquat Sci 69: 970-982. doi: 10.1139/f2012-030
Quinn TP, Foote CJ (1994) The effects of body size and sexual dimorphism on the reproductive behaviour of sockeye salmon, Oncorhynchus nerka. Anim Behav 48: 751-761. doi: 10.1006/anbe.1994.1300
Sard NM, O’Malley KG, Jacobson DP, Hogansen MJ, Johnson MA, Banks MA (2015) Factors influencing spawner success in a spring Chinook salmon (Oncorhynchus tshawytscha) reintroduction program. Can J Fish Aquat Sci 72:1390-1397. doi: 10.1139/cjfas-2015-0007
Seddon PJ, Armstrong DP, Maloney RF (2007) Developing the science of reintroduction biology. Conserv Biol 21:303–312. doi: 10.1111/j.1523-1739.2006.00627.x
Stark EJ, Atkinson EJ, Kozfkay CC (2014) Captive rearing for Chinook salmon (Oncorhynchus tshawytscha) and Atlantic salmon (Salmo salar): the Idaho and Maine experiences. Rev Fish Biol Fish 24: 849-880. doi: 10.1007/s11160-014-9346-x
Taggart JB, McLaren IS, Hay DW, Webb JH, Youngson AF (2001) Spawning success in Atlantic salmon (Salmo salar L.): a long‐term DNA profiling‐based study conducted in a natural stream. Mol Ecol 10:1047-1060. doi:10.1046/j.1365-294X.2001.01254.x
Theriault V, Moyer GR, Banks MA (2010) Survival and life history characteristics among wild and hatchery coho salmon (Oncorhynchus kisutch) returns: how do unfed fry differ from smolt releases? Can J Fish Aquat Sci 67: 486-497. doi: 10.1139/F09-200
Theriault V, Moyer GR, Jackson LS, Blouin MS, Banks MA (2011) Reduced reproductive success of hatchery coho salmon in the wild: insights into most likely mechanisms. Mol Ecol 20:1860-1869. doi:10.111/j.1365-294.2011.05058.x
Thomaz DM, Beall E, Burke T (1997) Alternative reproductive tactics in Atlantic salmon: factors affecting mature parr success. Proceedings of the Royal Society of London B: J Biol Sci 264:219-226. doi: 10.1098/rspb.1997.0031
van Oosterhout C, Hutchinson WF, Wills DP, Shipley P (2004) micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535–538. doi:10.1111/j.1471-8286.2004.00684.x
Waples RS (1990) Conservation genetics of Pacific salmon. II. Effective population size and the rate of loss of genetic variability. J Hered 81:267-276. Doi: 10.1093/oxfordjournals.jhered.a110989
Waples RS (2006). A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci. Conserv Genet 7:167-184. doi: 0.1007/s10592-005-9100-y
Waples RS, Do C (2008) LDNE: A program for estimating effective population size from data on linkage disequilibrium. Mol Ecol Resour 8: 753–756. doi: 10.1111/j.1755-0998.2007.02061.x
Waples RS, Do C (2010) Linkage disequilibrium estimates of contemporary Ne using highly variable genetic markers: a largely untapped resource for applied conservation and evolution. Evol Appl 3:244-262. doi: 10.1111/j.1752-4571.2009.00104.x
Waples RS, Ford MJ, Schmitt D (2007) Empirical results of salmon supplementation in the Northeast Pacific: A preliminary assessment. In Ecological and genetic implications of aquaculture activities (pp. 383-403). Springer, Dordrecht
Weir LK, Breau C, Hutchings JA, Cunjak RA (2010) Multiple paternity and variance in male fertilization success within Atlantic salmon Salmo salar redds in a naturally spawning population. J Fish Biol 77:479-493. doi: 10.1111/j.1095-8649.2010.02690.x
Weir LK, Grant JW (2005) Effects of aquaculture on wild fish populations: a synthesis of data. Environ Rev 13:145-168. doi:10.1139/A05-012
Weir LK, Hutchings JA, Fleming IA, Einum S (2004) Dominance relationships and behavioural correlates of individual spawning success in farmed and wild male Atlantic salmon, Salmo salar. J Anim Ecol 73:1069-1079. Doi: 10.1111/j.0021-8790.2004.00876.x
Williamson KS, Murdoch AR, Pearsons TN, Ward EJ, Ford MJ (2010) Factors influencing the relative fitness of hatchery and wild spring Chinook salmon (Oncorhynchus tshawytscha) in the Wenatchee River, Washington, USA. Can J Fish Aquat Sci 67:1840-1851. doi: 10.1139/F10-099
Wolf CM, Griffith B, Reed C, Temple SA (1996) Avian and mammalian translocations: update and reanalysis of 1987 survey data. Conserv Biol 10:1142-1154. doi:10.1046/j.1523-1739.1996.10041142.x
Wood JL, Yates MC, Fraser DJ (2016) Are heritability and selection related to population size in nature? Meta‐analysis and conservation implications. Evol Appl 9:640-657. doi: 10.1111/eva.12375
Wu M, Kalma D (2013) A Comparative Study of Wetland Vegetation in the Ausable and Boquet River Watersheds. North Nat 20:229-254.
Yates MC, Bernos TA, Fraser DJ (2017) Acritical assessment of estimating census population size from genetic population size (or vise versa) in three fishes. Evol App 10:935-945. Doi: 10.1111/exa.12496
Yue GH, Orban L (2005) A simple and affordable method for high-throughput DNA extraction for animal tissues polymerase chain reaction. Electrophoresis 26:38081-3083. Doi: 10.1002/elpse.200410411