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Theoretical Investigation of Small Molecules Interactions with Metal-Organic Frameworks and Silicene

Title:

Theoretical Investigation of Small Molecules Interactions with Metal-Organic Frameworks and Silicene

Jodaeeasl, Nazli ORCID: https://orcid.org/0009-0007-6139-8779 (2025) Theoretical Investigation of Small Molecules Interactions with Metal-Organic Frameworks and Silicene. PhD thesis, Concordia University.

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Abstract

Understanding and controlling surface–adsorbate interactions is crucial for designing advanced materials for applications such as toxic gas capture, sensing, and electronics. Although metal-organic frameworks (MOFs) are promising nanomaterial sorbents for toxic gases, the relationship between their structural and electronic properties and adsorption performance has not been established, limiting their rational design. Similarly, a detailed understanding of surface reactivity is lacking for other nanomaterials, such as silicene. Recent experiments show that silicene synthesized on highly oriented pyrolytic graphite (HOPG) exhibits stability against oxidation after weeks of air exposure, in contrast to previous results on other substrates and theoretical predictions. This discrepancy highlights the need for computational investigations to clarify surface reactivity and substrate effects. In this study, spin-polarized density functional theory (DFT) with Hubbard U correction is employed to investigate the adsorption mechanisms of toxic molecules on MOFs, focusing on M-MOF-74 (M = Mg, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn) and water-stable frameworks such as UiO-66, UiO-66-NH₂, UiO-67, MIL-53 and MFM-300. Toxic molecules adsorb on M-MOF-74 at unsaturated metals, whereas water-stable MOFs exhibit weak physisorption through hydrogen bonding. Including the Hubbard U correction is essential for accurately modeling the electronic structures and binding energies of MOFs containing transition metals. The M-MOF-74s display diverse magnetic behaviors. Interestingly, magnetic configurations do not significantly affect binding energies, suggesting that DFT calculations without considering magnetic states can reliably predict adsorption energies for these MOFs. However, cases such as V-MOF-74 show potential for magnetic sensing of NO₂. Furthermore, functionalization of MOFs, such as UiO-66-NH₂, enhances adsorption of NH₃, NO₂, and SO₂, highlighting the role of linker modifications in improving adsorption performance. As for silicene, DFT calculations using the generalized gradient approximation (GGA) indicate that both free-standing silicene and silicene on HOPG interact and react with O₂ via a barrierless process. However, DFT with hybrid functional reveals small energy barriers for oxidation, and Hartree–Fock methods predict significantly larger barriers, underscoring the sensitivity of predicted oxidation pathways to the choice of computational method. This study demonstrates the importance of advanced computational approaches and material design strategies in understanding the surface reactivity of materials.

Divisions:Concordia University > Faculty of Arts and Science > Physics
Item Type:Thesis (PhD)
Authors:Jodaeeasl, Nazli
Institution:Concordia University
Degree Name:Ph. D.
Program:Physics
Date:18 July 2025
Thesis Supervisor(s):Peslherbe, Gilles
ID Code:996167
Deposited By: NAZLI JODAEEASL
Deposited On:04 Nov 2025 17:25
Last Modified:04 Nov 2025 17:25
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