Crete, Simon Joseph Clement (2024) MRI-Based Brain Age Estimation Using Supervised Contrastive Learning. Masters thesis, Concordia University.
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Abstract
Brain age estimation models aim to accurately assess a subject's biological brain age based on neuroanatomical features. Various factors, including neurodegenerative diseases, can cause accelerated brain aging and measuring this phenomena could serve as a biomarker for clinical applications. While promising results have been achieved in previous works, there is no consensus on an optimal model for accurate prediction or clinical utility. This thesis proposes using supervised contrastive learning with Rank-N-Contrast (RNC) loss and Grad-RAM for explainability utilizing structural T1w MRI data. Results indicate that the supervised contrastive strategy significantly outperformed ResNet models, achieving a mean absolute error of 4.28 years and an R² of 0.93 with a limited dataset of aging subjects. Benchmark comparisons with state-of-the-art models demonstrated that the supervised contrastive approach achieved comparable performance in our test sample, particularly among older age groups. The Grad-RAM analysis revealed anatomically relevant regions associated with aging, with the more nuanced capabilities exhibited by the supervised contrastive learning approach. Analyses of disease populations revealed significantly higher brain age gaps in Alzheimer's Disease (AD) patients, correlating strongly with ADAS-cog scores (r = 0.37, p = 0.0098), suggesting its potential as a biomarker for assessing AD severity. However, no significant correlation was found between brain age gap and UPDRSIII scores in Parkinson's disease (PD) patients. The Grad-RAM focuses on regions known to be linked to AD and PD, but with little difference to the healthy population. Our study demonstrates the potential of supervised contrastive learning with an RNC loss in brain age prediction, highlighting its ability to outperform other models in smaller datasets.
Divisions: | Concordia University > Gina Cody School of Engineering and Computer Science > Computer Science and Software Engineering |
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Item Type: | Thesis (Masters) |
Authors: | Crete, Simon Joseph Clement |
Institution: | Concordia University |
Degree Name: | M. Comp. Sc. |
Program: | Computer Science |
Date: | 3 July 2024 |
Thesis Supervisor(s): | Xiao, Yiming and Kersten-Oertel, Marta |
ID Code: | 994127 |
Deposited By: | Simon Crête |
Deposited On: | 24 Oct 2024 16:16 |
Last Modified: | 24 Oct 2024 16:16 |
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