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A design of a BLAST server with Jini technology

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A design of a BLAST server with Jini technology

Yang, Liusong (2002) A design of a BLAST server with Jini technology. Masters thesis, Concordia University.

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Abstract

The explosion of biological data, particularly the nucleic acid and protein sequences, has been proved to be both an opportunity and challenge for biologists as well as computer experts. The burgeoning of huge-sized sequence databases necessitates the invention and renovation of powerful computational tools to efficiently manage and utilize these sequence data. Among the various bioinformatics tools, BLAST Local Alignment Search Tool) is the most commonly used one for DNA sequence database searching. To enhance its working efficiency, in this thesis, we have tried to design a new distributed system for BLAST service with the recently developed Jini technology. Since the service is involved in sequence databases query, the RMI (Remote Method Invocation) proxy was chosen in its architecture. The structures on both the client and the server sides were designed mainly based on Java technology and demonstrated with class diagrams of Unified Modeling Language (UML).

Divisions:Concordia University > Faculty of Engineering and Computer Science > Computer Science and Software Engineering
Item Type:Thesis (Masters)
Authors:Yang, Liusong
Pagination:ix, 76 leaves : ill. ; 29 cm.
Institution:Concordia University
Degree Name:Theses (M.Comp.Sc.)
Program:Computer Science and Software Engineering
Date:2002
Thesis Supervisor(s):Butler, Gregory
ID Code:1650
Deposited By:Concordia University Libraries
Deposited On:27 Aug 2009 13:21
Last Modified:08 Dec 2010 10:21
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